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Power Your Mission with Better Payroll and HR for Nonprofits

Manage tax-exempt payroll processing, fund allocations, and volunteer tracking with our all-in-one platform so you can focus on your mission.

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Trusted by top organizations across the nonprofit community
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Intuitive HCM Solutions Built for Nonprofits Like Yours

80%
Platform Adoption Rate
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Special Taxation & Compliance

APS understands 501(c)(3) payroll nuances, like FUTA exemptions and SUTA variability, by state. We help ensure compliance with IRS rules while handling tax-exempt status accurately and automatically.

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API Access for Enhanced Transparency

Leverage our API access to automate reporting and provide deep transparency in financial analysis, streamlining processes for funders and auditors.

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Labor-Level Time Tracking & Allocation

Track time more granularly and manage percent allocation across programs, grants, and departments.

Empowering Nonprofits with Specialized HR Tools

Customizable Reporting

Generate standard and ad hoc reports to satisfy board requests, donor requirements, and compliance needs.
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Benefits & Total Compensation Reporting

Highlight employer-paid benefits to improve retention and provide visibility into total compensation.
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Volunteer and Worker Management

Track paid staff, contractors, and volunteer records in one system without overcomplicating payroll or reporting.
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Real Success Stories from Our Clients

“With the large payroll company we used before, we were a little fish in a big sea of customers. Whenever we had a problem or a question, we had to re-explain our scenario every time, and we never felt important. With APS, they recognize our voice when we call; they care about our mission, and the personal care we have consistently received has been exceptional.”
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Thousands of businesses have saved millions of hours with APS.

98%
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Works Seamlessly with Your Existing Systems

We offer imports, exports, and integrations with accounting, general ledger, and 403(b) systems so you can get the most out of your investments.

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Empowering Nonprofits with Specialized HR Tools

APS provides tailored solutions addressing the unique challenges nonprofit organizations face. Strengthen your mission's impact without the burden of increased compliance risks.

Explore Valuable Nonprofit Resources and Insights

Do Nonprofits Pay Payroll Taxes for Employees?

While some nonprofits are tax-exempt, they still have...

27 Mar 2025 15 min read.

The Grant Reporting Process: A Complete Guide

The grant reporting process can be intimidating and...

28 Aug 2024 11 min read.

Frequently Asked Questions

How do I track and allocate employee time to multiple grants or programs?

That’s a common challenge for nonprofits! The best way is to use a time tracking system that lets staff assign their hours to specific grants or programs as they go. This makes payroll and reporting way easier, and keeps you audit-ready without the spreadsheet chaos.

What do I need to know about payroll taxes and compliance as a 501(c)(3)?

Even as a nonprofit, you’re not completely off the hook for payroll taxes. While you might be exempt from FUTA, you’ll usually still need to pay Social Security, Medicare, and possibly state unemployment taxes. It’s also smart to keep an eye on ACA rules if you’ve got a larger team.

How can I manage employees, contractors, and volunteers all in one system?

You’re not alone—many nonprofits juggle a mix of staff, volunteers, and contractors. A sound system lets you organize everyone in one place with the correct permissions and tracking for each group. That means less manual work and more time for your mission.

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